PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G100400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 372aa    MW: 40925.4 Da    PI: 4.4381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G100400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-102973371055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Aqcoe5G100400.1.p 297 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 337
                        9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-14287352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.913287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-12292347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-11293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-12296341No hitNo description
PfamPF000101.3E-7297337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MASLGTISEG EWSSFGGMIS TDEASFMSQF IGNYAFQSEQ EDGSLSLANI ASTFWPCHEP  60
ITTAVGLDEN LYFCHDANSN SDYFPKGCSN SASVFLPYIE QENYHLNNAS SILIDNNNVM  120
PMDFCMMEEQ NPSFPCKVIS DNVMEEVACL SQEISDSLGE TEGHPSNAVS SPDSKSQPKR  180
KSEMTQLETD TENKSIAILS ENPKKKSRAS GSARKNKKNV EPKKNKAITV ASNNDEEISA  240
DLNGQSSSSN ISEDDTNVPQ EVNGVEADCK VSESLDMNGK TRAGRGSATD PQSIYARKRR  300
ERINERLRIL QNLVPNGTKV DISTMLEEAV HYVKFLQVQI KLLSSDDMWM YAPLAYNGMD  360
LGLDLKISQP R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042632.11e-103Basic helix-loop-helix DNA-binding superfamily protein, putative
TrEMBLA0A061E8551e-103A0A061E855_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGPOPTR_0009s09210.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.18e-44ROOT HAIR DEFECTIVE 6-LIKE 2